VISDB Viral Integration Site DataBase

VIS ID

TVIS30006192

Fusion event

HIV-PIP4K2C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

57992503/57598720 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-877-3p ; hsa-mir-125b-5p ; hsa-mir-101-5p ; hsa-mir-142-5p ; hsa-mir-374a-3p ; hsa-mir-340-5p ; hsa-mir-545-3p ; hsa-mir-921 ; hsa-mir-3174 ; hsa-mir-3617-3p ; hsa-mir-548at-5p ; hsa-mir-5590-5p ; hsa-mir-5590-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-6828-5p ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-526b-5p ; hsa-mir-3659 ; hsa-mir-574-5p ; hsa-mir-20b-3p ; hsa-mir-3137 ; hsa-mir-361-5p ; hsa-mir-561-3p ; hsa-mir-1185-5p ; hsa-mir-3190-3p ; hsa-mir-3679-5p ; hsa-mir-451b ; hsa-mir-4525 ; hsa-mir-4534 ; hsa-mir-4668-5p ; hsa-mir-4716-3p ; hsa-mir-4796-3p ; hsa-mir-4802-5p ; hsa-mir-5010-5p ; hsa-mir-548az-5p ; hsa-mir-548t-5p ; hsa-mir-6079 ; hsa-mir-671-5p ; hsa-mir-6794-5p ; hsa-mir-6894-5p ; hsa-mir-7109-3p ; hsa-mir-7154-3p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-8082 ; hsa-mir-1324 ; hsa-mir-188-3p ; hsa-mir-3120-3p ; hsa-mir-5000-5p ; hsa-mir-6729-3p

Nearest miRNA

hsa-mir-1228/Upstream/79461; hsa-let-7i/Downstream/149898;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/7201, chr12-CpG: 33/Downstream/6114

Upstream sequence

ATGACACAGCACAGCCCAACCCAATGCAGACATTTTAAATTATGGGAATCTAGCCTATGAAGAAACACTGCTCTAGATAAAATGATTTCATTGATAAGAT

Downstream sequence

ATAAGTTGTAATCCTGGTTCTGTGCCACTTGCATATAGAAAGGGTCTAAAATAAGGATAATAACACTTAACCTTCCTCATCTCAAAGAATGATAAAGGTG