VISDB Viral Integration Site DataBase

VIS ID

TVIS30006195

Fusion event

HIV-XPOT integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q14.2

Reference genome

Start

End

64821881/64428101 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-342-3p ; hsa-mir-92a-3p ; hsa-mir-30a-5p ; hsa-mir-190a-3p ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-5011-5p ; hsa-mir-4689 ; hsa-mir-6858-5p ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-4724-3p ; hsa-mir-9-3p ; hsa-mir-1294 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-4433b-3p ; hsa-mir-6782-3p ; hsa-mir-1252-3p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-6083 ; hsa-mir-1277-5p ; hsa-mir-410-3p ; hsa-mir-3163 ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-6878-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-4312 ; hsa-mir-6778-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-6807-5p ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-205-5p ; hsa-mir-140-3p ; hsa-mir-4650-5p ; hsa-mir-3142 ; hsa-mir-1245b-5p ; hsa-mir-449b-3p

Nearest miRNA

hsa-let-7i/Upstream/604374; hsa-mir-1178/Downstream/194408;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/22937, chr12-CpG: 90/Downstream/23718

Upstream sequence

CTGTTTTGAGCACTGTTATTAATTGTGATTTCCTTTTTCTGTTTTTCAGTAAGCAAATGAATCCTTTCATTGAGGATATTTTGAATAGAATACAAGATTT

Downstream sequence

ATTAGAGCTTTCTCCACCTGTAAGTATCTGTCTCTTTAAGATATTTTACCCAGAATTCATTGAAGCCACACGTGCCATTAGCCTTGCCTTTGTTGGCATT