Basic Information
VIS ID
TVIS30006198
Fusion event
HIV-HELB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
66700138/66306358 (Hg38)
End
66700138/66306358 (Hg38)
Orient
-
Location type
Exonic
Target gene
HELB
Nearest miRNA
hsa-let-7i/Upstream/55201; hsa-mir-1178/Downstream/2966799;
Nearest TSS
ENST00000382841/Upstream/3778; ENST00000536862/Downstream/15044;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/70734, chr12-CpG: 105/Downstream/762532
Upstream sequence
GGTTGTGCAAAATGAGAAAGTACTTCAAATCAGTCATTCTTTGGGTTCATTTATGTTTTACTTTGTTCCTTTCTGATATCTTGTAGTTCCATTTAGAAAT
Downstream sequence
GTAATGACAGCTTTGCAGTTTCCGAAGATAATGGAATTCCTTCCAGTTCTTCTGCCTCGACACTTTAAATGGATCATAGGGTCAGGTTCTAAAGAGATGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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