Basic Information
VIS ID
TVIS30006200
Fusion event
HIV-LOC107984526 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
68432793/68039013 (Hg38)
End
68432793/68039013 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984526
Nearest miRNA
hsa-let-7i/Upstream/1787856; hsa-mir-1178/Downstream/1234144;
Nearest TSS
ENST00000382841/Upstream/49484; ENST00000544089/Downstream/120734;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/388917, chr12-CpG: 54/Downstream/293054
Nearby gene
IFNG-AS1(No orient, 17686)
Upstream sequence
CCTCCCTACTCCCACCCACCAGGCAAGAAAGCTTAAACCTAGTAAAATCTCTGAGTGCTCAACATGGAATGGAAAACCCAGAAGAGCAAGGTTGGAAATT
Downstream sequence
GTAGCTGGGAAGTCTCAAGTTCTCTGGTTCCTCCTGGAAGAGGGCATGAAGGTGGCTTTGTGTAAATATGGGCATATTGATTTTTATTTGATGAGCCATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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