Basic Information
VIS ID
TVIS30006207
Fusion event
HIV-ZDHHC17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
77246723/76852943 (Hg38)
End
77246723/76852943 (Hg38)
Orient
-
Location type
UTR3
Target gene
ZDHHC17
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-30b-5p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-5689 ; hsa-mir-4643 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485
Nearest miRNA
hsa-let-7i/Upstream/7268120; hsa-mir-1178/Downstream/2566314;
Nearest TSS
ENST00000382841/Upstream/4705; ENST00000552426/Downstream/12011;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/88318, chr12-CpG: 68/Downstream/25854
Upstream sequence
AAATTGGTTAACTTTACAAATGTCAGCTAGTTTTGACTACTAATTGGGGGAAATTTTAGATAATTTTTAAATTCAAAGTTATTTATAAAATGCTAGAATT
Downstream sequence
TGTTTTAATTTTTTGTATTTTGAGCCACTTCACATGAAGACTCAGTTGCATTTTTATCGAATACATTTTTATCAACAGTTAAAGACTATGGTGGTTTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate