Basic Information
VIS ID
TVIS30006210
Fusion event
HIV-LOC105369873 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
82683974/82290195 (Hg38)
End
82683974/82290195 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LOC105369873
Nearest miRNA
hsa-let-7i/Upstream/1131734; hsa-mir-1178/Downstream/4454873;
Nearest TSS
ENST00000382841/Upstream/336476; ENST00000547985/Downstream/65926;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/531300, chr12-CpG: 60/Downstream/68030
Nearby gene
CCDC59(No orient, 62109)
Upstream sequence
aacactctactgaaaggcacaatcctccagtgtgaattttataaaaatgtacaacagattatgatactctctagttcaaagtttccatgggccatccata
Downstream sequence
atactcagaaaatatcctaaccgtagcccttatgttcctagtctatcttcacaatctcatctcctatctctttctactaattttcttcacttcagccatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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