Basic Information
VIS ID
TVIS30006212
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
84711476/84317697 (Hg38)
End
84711476/84317697 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12B
Nearest miRNA
hsa-let-7i/Upstream/3159236; hsa-mir-1178/Downstream/2427371;
Nearest TSS
ENST00000382841/Upstream/33306; ENST00000393212/Downstream/550136;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1629830, chr12-CpG: 17/Downstream/593724
Nearby gene
SLC6A15(No orient, 541791)
Upstream sequence
CTAAAACTTACAACCAAAACAGACTAAAGAAGTTAACAGGTATTTATGCAATCCAGGATCCCGAAATTGCAACTAAAACAATTGCAGTAAAAAGATAATA
Downstream sequence
GAGAAAACTGAACATTCAGAAGGCAGTATCAAAAACAATTCAAGAACATTTCTTAAAGTAAAACTCATCTTCGTATAAAATGGTTTATCCATAATAATGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate