Basic Information
VIS ID
TVIS30006213
Fusion event
HIV-LRRIQ1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
85529170/85135392 (Hg38)
End
85529170/85135392 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LRRIQ1
Nearest miRNA
hsa-let-7i/Upstream/3976931; hsa-mir-1178/Downstream/1609676;
Nearest TSS
ENST00000382841/Upstream/90611; ENST00000526363/Downstream/24123;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/222342, chr12-CpG: 56/Downstream/144708
Upstream sequence
tctactgtttgttctgattcaggttttttttttagcaagaatatttcataggtggtggttgtattacaaaaatgagatacatagtatctggttgcctctc
Downstream sequence
tttaaggaatattactggccattggtaaacattgcctagatcgattattgtattaatggtttgcacaatggtgatactttctatctactattctttatta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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