Basic Information
VIS ID
TVIS30006214
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
89607132/89213355 (Hg38)
End
89607132/89213355 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12B
Nearest miRNA
hsa-let-7i/Upstream/2468206; hsa-mir-1178/Downstream/5348434;
Nearest TSS
ENST00000382841/Upstream/193676; ENST00000611513/Downstream/96198;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/632466, chr12-CpG: 248/Downstream/138036
Nearby gene
DUSP6(No orient, 134470)
Nearest cancer related gene
DUSP6(TSG, No orient, 134470)
Upstream sequence
AATTTCAAGCTGTTTTATATGTTCCCTGTGACAATGGCAAGAATCCAAGGTACATTTTGAAGACAAATAAAATGAACAGTAtttttttttttgagacaga
Downstream sequence
gtcttgctctgtcacacatgctagagtgcagtagtacaatttcagttcactgcaacctctgcctcccaggttcaagtaattctcatgcctcagccaacca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate