VISDB Viral Integration Site DataBase

VIS ID

TVIS30006217

Fusion event

HIV-BTG1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q21.33

Reference genome

Start

End

92537793/92144017 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-484 ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-2681-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-22-3p ; hsa-mir-127-5p ; hsa-mir-7843-3p ; hsa-mir-4436b-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-4786-3p ; hsa-mir-4635 ; hsa-mir-1284 ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-3180-5p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-5580-3p ; hsa-mir-643 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-1264 ; hsa-mir-4282 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-520a-3p ; hsa-mir-302e ; hsa-mir-520b ; hsa-mir-520e ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-302d-3p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-550b-2-5p ; hsa-mir-1227-3p ; hsa-mir-581 ; hsa-mir-6512-5p ; hsa-mir-510-3p ; hsa-mir-498 ; hsa-mir-2054 ; hsa-mir-3678-3p ; hsa-mir-203a-3p ; hsa-mir-6844 ; hsa-mir-6826-3p ; hsa-mir-4671-3p ; hsa-mir-633 ; hsa-mir-2467-3p ; hsa-mir-6068 ; hsa-mir-3158-5p ; hsa-mir-331-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-3919 ; hsa-mir-6513-3p ; hsa-mir-4699-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-5683 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-19a-5p ; hsa-mir-301a-5p

Nearest miRNA

hsa-let-7i/Upstream/5398868; hsa-mir-1178/Downstream/2417772;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/1189698, chr12-CpG: 128/Downstream/917

Upstream sequence

CTGTCACttaaaattttttttttttttaCCATTCTATCTTGTGCCAGATCTTCACAGCTGTGACATGGTTTAAATTCCATAATCCATCCCCAAGAGGAGC

Downstream sequence

CCACCCAAAGCAAAAATCAAATTTATCCATCATCATCAGATGATCCATCCACAGACTATATCTTAACCTGATACAGTCATCATATTGTAGTTTTTGGAAG