Basic Information
VIS ID
TVIS30006218
Fusion event
HIV-LINC02391 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
92684902/92291126 (Hg38)
End
92684902/92291126 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LINC02391
Nearest miRNA
hsa-let-7i/Upstream/5545977; hsa-mir-1178/Downstream/2270663;
Nearest TSS
ENST00000382841/Upstream/144679; ENST00000508671/Downstream/72706;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/144569, chr12-CpG: 133/Downstream/637440
Nearby gene
CLLU1OS(No orient, 128968)
Upstream sequence
tttggtttattcttgaaatttcaccgcctaatgaagtgcctggatgagagcaggcttgaataaacaATGAATGTGGTTTTCAGTAAGATTAATAGTGTGG
Downstream sequence
TTCTTTACATATGATGTGCAAAGTCAACATGTTAGAGCAGCTACCACTTTAAGGCTAGACAGTGAGGTTACTACATATCTCATCCTGGAAGATGGAATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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