Basic Information
VIS ID
TVIS30006231
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
101814695/101420917 (Hg38)
End
101814695/101420917 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/1230968; hsa-mir-1178/Downstream/2509508;
Nearest TSS
ENST00000382841/Upstream/11857; ENST00000551346/Downstream/54504;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/12542, chr12-CpG: 23/Downstream/221558
Nearby gene
ARL1(No orient, 13097)
Upstream sequence
tcacctgaggtcaggagtttgagaacagcctgaccaatgtggtgaaaccccgtctctactaaaaatacaaaattagcgggacgcggtggctcatgcctgt
Downstream sequence
aatcccagcactttgggaggctgaggtggcagatcatgaggtcaggagttcaagaccagcctggtcaacctgatgaaaccccgactctactaaaaataca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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