Basic Information
VIS ID
TVIS30006232
Fusion event
HIV-PMCH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
102591469/102197691 (Hg38)
End
102591469/102197691 (Hg38)
Orient
+
Location type
Exonic
Target gene
PMCH
Nearest miRNA
hsa-let-7i/Upstream/2007742; hsa-mir-1178/Downstream/1732734;
Nearest TSS
ENST00000382841/Upstream/73703; ENST00000635615/Downstream/154;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/77520, chr12-CpG: 38/Downstream/626651
Upstream sequence
GCAATAACTGATTTTTCTGCAGTGTCTTCCTTCTGAAAGCCTTTCCCCAACCTGAATGTATTAAATACCATGTCATCATCTAAATTTCTTATGGACTTGG
Downstream sequence
ATGCTGAAAGTAAAATACCTTGAGAAAACAAAGAAAAAGTTAGTATTAATATATAGGAAGAGAGATTCATTTTTGCCATTCTTAGTTTGATGTTTGCATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate