Basic Information
VIS ID
TVIS30006236
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
106423108/106029330 (Hg38)
End
106423108/106029330 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/1437614; hsa-mir-1178/Downstream/2606480;
Nearest TSS
ENST00000382841/Upstream/322556; ENST00000548901/Downstream/28924;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/698056, chr12-CpG: 176/Downstream/108998
Nearby gene
NUAK1(No orient, 34017)
Nearest cancer related gene
NUAK1(TSG, No orient, 34017)
Upstream sequence
aGTATGCTCCATAACAAATGAATTCAGACACAACATGACCAGTGGCTGGCAATTAGTTCTCATCTTCAACAGCTCGATAACACTGACCCCACACTTTAAG
Downstream sequence
TGACAAAGTATGTTTTGGGTTTCACTTCTAGCATTACGGTGTGATTTTTAGCAttctagaagaaagcataggagaatgtttttacaaccttgagacaggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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