Basic Information
VIS ID
TVIS30006239
Fusion event
HIV-BTBD11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
107756221/107362444 (Hg38)
End
107756221/107362444 (Hg38)
Orient
+
Location type
Intronic
Target gene
BTBD11
Nearest miRNA
hsa-let-7i/Upstream/2770728; hsa-mir-1178/Downstream/1273366;
Nearest TSS
ENST00000382841/Upstream/41856; ENST00000494235/Downstream/218206;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/42114, chr12-CpG: 46/Downstream/218621
Upstream sequence
ccagcttctcttcccaaactcattaatgagatgaggccttccatctccccagggaagacgtaaggggctaatgccaggaatgtcatacaaatggatgtcc
Downstream sequence
ctccacgtggcaggaaacatcagtagaggggaataCTGTTCTCTAATAATAACAATAAAAATGGTAgaccaggtgtagtggctcacacctgtaatcccag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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