Basic Information
VIS ID
TVIS30006241
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
108284040/107890263 (Hg38)
End
108284040/107890263 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/3298547; hsa-mir-1178/Downstream/745547;
Nearest TSS
ENST00000382841/Upstream/25701; ENST00000546811/Downstream/239208;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/45319, chr12-CpG: 40/Downstream/13386
Nearby gene
LOC728739(No orient, 12887)
Upstream sequence
gagccaccatgtccagcctaatttttcttataaattcttttttggcccattagtcactttagaatgtgttaatttccacatatttgtgaattttccattt
Downstream sequence
ttccttctgctgttgatttctagttttattccattgGATGTACAATACAGGGCCCATTTTTGCCTAATTTATATAACACCCTGTTTATATCTAGTCTCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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