VISDB Viral Integration Site DataBase

VIS ID

TVIS30006244

Fusion event

HIV-ATP2A2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.11

Reference genome

Start

End

110761681/110323876 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-142-3p ; hsa-mir-26b-5p ; hsa-let-7b-5p ; hsa-mir-1226-3p ; hsa-mir-671-5p ; hsa-mir-484 ; hsa-mir-15b-5p ; hsa-mir-221-3p ; hsa-mir-197-3p ; hsa-mir-100-5p ; hsa-mir-31-5p ; hsa-let-7f-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-25-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-3185 ; hsa-mir-4781-5p ; hsa-mir-4786-3p ; hsa-mir-511-3p ; hsa-mir-568 ; hsa-mir-651-3p ; hsa-mir-6884-3p ; hsa-mir-223-5p ; hsa-mir-944 ; hsa-mir-874-3p ; hsa-mir-3157-3p ; hsa-mir-3941 ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-216b-3p ; hsa-mir-4789-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-3171 ; hsa-mir-4495 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-4733-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p

Nearest miRNA

hsa-let-7i/Upstream/490440; hsa-mir-1178/Downstream/980266;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/41619, chr12-CpG: 53/Downstream/79340

Upstream sequence

gcaagactctgtctccaaaaaaaaGTTGTAATTTGTTCGTTACCATAGGTAAATCTTAAGGTTGAATTGTTGTCTGTTTTGTGGAAAGCAAATTACTTAT

Downstream sequence

TCGATGTCCTTTTTCCAGGCAAGAAAAATAGACTCCAGTGCTGTAATTTTTTTCACTGGAGGAGTGCTAATGTTGTATCAATCTTTACAGTATCCAAATA