Basic Information
VIS ID
TVIS30006259
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
115808918/115371113 (Hg38)
End
115808918/115371113 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12E ; FRA12C
Nearest miRNA
hsa-let-7i/Upstream/2079505; hsa-mir-1178/Downstream/777447;
Nearest TSS
ENST00000382841/Upstream/8101; ENST00000548457/Downstream/198551;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/634096, chr12-CpG: 44/Downstream/80679
Nearby gene
MED13L(No orient, 587463)
Upstream sequence
GATCCCCATATTGAAAACTCAGGAAATCAGAAATGGGTGGTTTTGTTTTGAGTTGTTTTTTCTGGTTTTGTTCTCCCTTTTCCTTTTCTGTGGAAGGCTC
Downstream sequence
TGGGCTCTCTCTAAGGCTCTTGTCTTCACATCCTAGTGGGTTGTCTGTTTTATTTCCTTCTCTGTTTTCTAAAGAAGCCATCTTTGGGAGGCCTCCTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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