VISDB Viral Integration Site DataBase

VIS ID

TVIS30006278

Fusion event

HIV-MLXIP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

122527511/122089605 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-877-5p ; hsa-mir-421 ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-4710 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-4763-3p ; hsa-mir-149-3p ; hsa-mir-1207-5p ; hsa-mir-6077 ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-6804-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4784 ; hsa-mir-1827 ; hsa-mir-4756-5p ; hsa-mir-3150b-3p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6873-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-6816-3p ; hsa-mir-3941 ; hsa-mir-5689 ; hsa-mir-8064 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4298 ; hsa-mir-1302 ; hsa-mir-561-5p ; hsa-mir-216b-3p ; hsa-mir-3922-5p ; hsa-mir-603 ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-5695 ; hsa-mir-662 ; hsa-mir-3614-3p ; hsa-mir-483-5p ; hsa-mir-6801-5p ; hsa-mir-1914-5p ; hsa-mir-4793-5p ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-6871-3p ; hsa-mir-377-3p ; hsa-mir-4284 ; hsa-mir-342-3p ; hsa-mir-4714-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-122-5p ; hsa-mir-1299 ; hsa-mir-1304-3p ; hsa-mir-140-3p ; hsa-mir-143-5p ; hsa-mir-150-3p ; hsa-mir-216a-5p ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4476 ; hsa-mir-500b-3p ; hsa-mir-504-3p ; hsa-mir-5698 ; hsa-mir-6128 ; hsa-mir-6499-3p ; hsa-mir-6736-3p ; hsa-mir-6787-3p ; hsa-mir-6802-3p ; hsa-mir-6876-5p ; hsa-mir-6890-3p ; hsa-mir-875-3p ; hsa-mir-1182 ; hsa-mir-129-5p ; hsa-mir-193a-5p ; hsa-mir-3674 ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4732-5p ; hsa-mir-6832-5p

Nearest miRNA

hsa-let-7i/Upstream/645253; hsa-mir-3612/Downstream/606302;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/10304, chr12-CpG: 23/Downstream/34564

Upstream sequence

TTGAAGCAGAAAACTCTTTCATCCGTTTGTAGTCAGGCTTTTTTCtttttaacacaactttctgtaagtgtaatttacatagcataaaatggacccattg

Downstream sequence

taagtgtaaggttcagtgatttttttttttagttgtgcagtcattgtcacagcccagtgctgggacattccatcacctcagtaagatccccagagtacat