VISDB Viral Integration Site DataBase

VIS ID

TVIS30006280

Fusion event

HIV-CLIP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

122828067/122343520 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-103a-3p ; hsa-mir-19b-3p ; hsa-mir-205-5p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-4517 ; hsa-mir-337-5p ; hsa-mir-4485-3p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548n ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-19a-3p ; hsa-mir-653-5p ; hsa-mir-3175 ; hsa-mir-4509 ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-6741-5p ; hsa-mir-340-5p ; hsa-mir-6748-5p ; hsa-mir-3944-5p ; hsa-mir-376a-2-5p ; hsa-mir-4286 ; hsa-mir-936 ; hsa-mir-6834-3p ; hsa-mir-3163 ; hsa-mir-140-3p ; hsa-mir-3662 ; hsa-mir-107 ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-8070 ; hsa-mir-4477a ; hsa-mir-3689f ; hsa-mir-3689e ; hsa-mir-3689b-5p ; hsa-mir-3689a-5p ; hsa-mir-4668-3p

Nearest miRNA

hsa-let-7i/Upstream/899168; hsa-mir-3612/Downstream/352387;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/76839, chr12-CpG: 140/Downstream/78337

Upstream sequence

ccacgcctggccTACTGATCATTTTATTAAAACACAAAGTAAGAATGATTACTTACCTGCAATAATACACAAGAATCTTACACAAAATCCCCTTTTTAGA

Downstream sequence

TATGATAATTCTATCAGCATTTTGATGTAAACATCTTCTTCCCCTAACCCCCTAACCcagtggttctcagacattagtacgcacatgaatcacctggaat