VISDB Viral Integration Site DataBase

VIS ID

TVIS30006293

Fusion event

HIV-GTF2H3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

124133715/123649168 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-33a-5p ; hsa-mir-484 ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-4524a-3p ; hsa-mir-4716-5p ; hsa-mir-6823-5p ; hsa-mir-4307 ; hsa-mir-4524b-3p ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p

Nearest miRNA

hsa-let-7i/Upstream/112634; hsa-mir-3612/Downstream/688013;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/15236, chr12-CpG: 48/Downstream/21863

Upstream sequence

agattctcctgcctcagcctcccaagtagctgggattataggcacgtaccaccatgcctgactaatttttaatatttttagtagagatggggtttcacca

Downstream sequence

tgttggccaggcttgtctccaactcctgacctcagttgatccacccaactcggccttccaaagggctggaattacaggtgtgagccaccacacccaggcc