Basic Information
VIS ID
TVIS30006301
Fusion event
HIV-MIPEPP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
21875430/21301291 (Hg38)
End
21875430/21301291 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIPEPP3
Nearest miRNA
hsa-mir-4499/Upstream/867445; hsa-mir-1267/Downstream/2861125;
Nearest TSS
ENST00000623511/Upstream/66723; ENST00000461657/Downstream/43554;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2765, chr13-CpG: 46/Downstream/17726
Upstream sequence
gactccgtctcaaaaaaaaaattaaaaaTGATGTTATGAAATCATTTTTGGTGTAATTTATGTGGGGTGATATGAGGAGTATGATAGTGGTGTTCGTGAT
Downstream sequence
CACAGGTATAACATGATATACCAATGAAAGTCAAGATTTGCTTTGTGACAAAAGTAATTTTAGTAAATATTTAAAAAGCACAATTTTGAATTTTGGTTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate