Basic Information
VIS ID
TVIS30006306
Fusion event
HIV-GTF3A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
28002927/27428790 (Hg38)
End
28002927/27428790 (Hg38)
Orient
-
Location type
Intronic
Target gene
GTF3A
Nearest miRNA
hsa-mir-2276/Upstream/3266286; hsa-mir-1267/Downstream/12235244;
Nearest TSS
ENST00000623511/Upstream/3379; ENST00000493903/Downstream/423;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3749, chr13-CpG: 105/Downstream/21238
Upstream sequence
GGTTTAGAGTGAAgaatggcaggaaccccagcacaagagatgcttaaacaagatgggctctttgtcttgtgcgactgaaatacagaaatacagaggcagg
Downstream sequence
agctctggagcctcttctgactggtctctgccatcctcatcttgggctttaacctcactgtgatgcctgtttgggcccatctgtcacataagcatgccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate