Basic Information
VIS ID
TVIS30006312
Fusion event
HIV-UBL3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
30416874/29842737 (Hg38)
End
30416874/29842737 (Hg38)
Orient
-
Location type
Intronic
Target gene
UBL3
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-30a-5p ; hsa-mir-26b-5p ; hsa-mir-186-5p ; hsa-mir-181a-5p ; hsa-mir-192-3p ; hsa-mir-3915 ; hsa-mir-3928-3p ; hsa-mir-4502 ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-5692a ; hsa-mir-155-5p ; hsa-mir-5700 ; hsa-mir-5002-5p ; hsa-mir-3591-5p ; hsa-mir-374b-3p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-6847-3p ; hsa-mir-512-3p ; hsa-mir-6854-5p ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-5587-5p ; hsa-mir-4693-5p ; hsa-mir-3143 ; hsa-mir-194-5p ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-4744 ; hsa-mir-1183 ; hsa-mir-543 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p
Nearest miRNA
hsa-mir-2276/Upstream/5680233; hsa-mir-1267/Downstream/9821297;
Nearest TSS
ENST00000623511/Upstream/247049; ENST00000481738/Downstream/7947;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/246628, chr13-CpG: 79/Downstream/7275
Upstream sequence
attaaatgctataatgtaaaatgccaagcatctgcctggtactagaaagtacacaacaaatattagttctCTCTCCTCTACGAGCTCAAAGTAAAGTTAT
Downstream sequence
GTGTAATTTTTTTATCACCTAAGCAGTTCTtcactatcaagaaactgcatctctgcaaaacataactaacagccagaaaattagccctcctaaaaagaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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