Basic Information
VIS ID
TVIS30006314
Fusion event
HIV-N4BP2L1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
32998428/32424291 (Hg38)
End
32998428/32424291 (Hg38)
Orient
-
Location type
Intronic
Target gene
N4BP2L1
Nearest miRNA
hsa-mir-2276/Upstream/8261787; hsa-mir-1267/Downstream/7239743;
Nearest TSS
ENST00000623511/Upstream/12685; ENST00000466078/Downstream/3715;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/108528, chr13-CpG: 65/Downstream/2821
Upstream sequence
CAATACACTTACTACAATGAAGCCTTCACTTCAATCAAGCCCGGGAGCACACCCAGCTCTCTGCCACCTCCATCTCCTTAGTCGGGCTGTTGTTCCTTTT
Downstream sequence
CCTTCGTTCAGCCACCTCCTTCCCATCTTCAAGGCCAGCTCAAGAACCGTCTCCATGTGGAGAAGATCCTTTCTCCCTAATTAGCCTTCATCCTCCTCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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