Basic Information
VIS ID
TVIS30006320
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
34252840/33678703 (Hg38)
End
34252840/33678703 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/9516199; hsa-mir-1267/Downstream/5985331;
Nearest TSS
ENST00000623511/Upstream/1935; ENST00000380071/Downstream/139346;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/135700, chr13-CpG: 38/Downstream/139287
Nearby gene
STARD13(No orient, 1868)
Nearest cancer related gene
STARD13(TSG, No orient, 1868)
Upstream sequence
AAAGAAACtgtctcaagcttgtagtcccagcactttgggaggttgaggtaggcagatcacttgaggccaggagtttgagagcagcctggccaacatggtg
Downstream sequence
aaaccccatctctactaaaaataaaaaaaaattaggtgggtatggtggtgtacgcctgtaatcccagctactcaggagactgaggcatgagaatcgcttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate