VISDB Viral Integration Site DataBase

VIS ID

TVIS30006330

Fusion event

HIV-AKAP11 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr13

Cytoband

q14.11

Reference genome

Start

End

42855836/42281700 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-548b-3p ; hsa-mir-148b-3p ; hsa-mir-130b-3p ; hsa-mir-106b-5p ; hsa-mir-186-5p ; hsa-mir-122-5p ; hsa-mir-23b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-101-3p ; hsa-mir-93-5p ; hsa-mir-33a-5p ; hsa-mir-615-3p ; hsa-let-7g-5p ; hsa-mir-3185 ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-5571-5p ; hsa-mir-95-5p ; hsa-mir-142-5p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548t-3p ; hsa-mir-3609 ; hsa-mir-548z ; hsa-mir-548aa ; hsa-mir-548ac ; hsa-mir-548ah-5p ; hsa-mir-4504 ; hsa-mir-548ap-3p ; hsa-mir-5586-3p ; hsa-mir-5590-3p ; hsa-mir-548bb-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4778-5p ; hsa-mir-6833-5p ; hsa-mir-1236-5p ; hsa-mir-6831-3p ; hsa-mir-1277-5p ; hsa-mir-3153 ; hsa-mir-3190-3p ; hsa-mir-4668-5p ; hsa-mir-5585-3p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-3686 ; hsa-mir-4709-3p ; hsa-mir-4635 ; hsa-mir-4796-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-5692a ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-6754-5p ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-9500 ; hsa-mir-4742-3p ; hsa-mir-4752 ; hsa-mir-1252-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-656-3p ; hsa-mir-1228-3p ; hsa-mir-4287 ; hsa-mir-466 ; hsa-mir-4685-3p ; hsa-mir-548a-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548av-5p ; hsa-mir-548ay-5p ; hsa-mir-548b-5p ; hsa-mir-548bb-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548j-5p ; hsa-mir-548k ; hsa-mir-548l ; hsa-mir-548o-5p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-559 ; hsa-mir-8054 ; hsa-mir-3941 ; hsa-mir-4672 ; hsa-mir-603

Nearest miRNA

hsa-mir-2276/Upstream/713305; hsa-mir-1267/Downstream/1914429;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/9029, chr13-CpG: 38/Downstream/710238

Upstream sequence

cattcagaaaagtacaaaactcaacatacatagacacaaaatgaaacacccatgattgtatctacccagatgaaaccaatgtctgtactcatctagtgta

Downstream sequence

tgtcttcttttatattacatatatagatacacacatgtagttatacagatttttcacaaaatgggataatgctaatatgcCAGAACCTGTCTTATTTTAC