Basic Information
VIS ID
TVIS30006333
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
42944075/42369939 (Hg38)
End
42944075/42369939 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/801544; hsa-mir-1267/Downstream/1826190;
Nearest TSS
ENST00000623511/Upstream/30751; ENST00000637043/Downstream/54953;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/97268, chr13-CpG: 38/Downstream/621999
Nearby gene
AKAP11(No orient, 46672)
Upstream sequence
cttgcttcaactcatccgtcatgactttctcacagctattaaaacatgttttacaagcagaaacttacattttagatgaataaatgcaggctcctgagga
Downstream sequence
aaggcactttcatgattgtttgagctgtgagctcaactatctgcttttccatggaacaccatatttgtttgaaaggccaactgatagacaggctgtggct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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