Basic Information
VIS ID
TVIS30006335
Fusion event
HIV-ENOX1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
44187967/43613831 (Hg38)
End
44187967/43613831 (Hg38)
Orient
-
Location type
Intronic
Target gene
ENOX1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-526b-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-5692a ; hsa-mir-2681-5p
Nearest miRNA
hsa-mir-2276/Upstream/2045436; hsa-mir-1267/Downstream/582298;
Nearest TSS
ENST00000623511/Upstream/69913; ENST00000604480/Downstream/173077;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/590111, chr13-CpG: 159/Downstream/172067
Upstream sequence
taacagacctataagtagtaagaagattaaatctactaaaataccaaaaattagccgggcatggtggtaggtgcctgtagtcccagctactcgggaggct
Downstream sequence
gaggcacaataatcgcttgagccccggaggcggaggttgcagtgagccgccgagatcatgccactgcattccagcttgggctacaaaataagactctctc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate