Basic Information
VIS ID
TVIS30006338
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.12
Reference genome
GRCh37/hg19
Start
45314591/44740455 (Hg38)
End
45314591/44740455 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/544255; hsa-mir-1267/Downstream/5255960;
Nearest TSS
ENST00000623511/Upstream/25062; ENST00000611650/Downstream/69175;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/162303, chr13-CpG: 64/Downstream/248698
Nearby gene
LINC00330(No orient, 59049)
Upstream sequence
tagtcccagctactcaggagtctgaggcagaagaattgcttgaatccgggaggcagaggttgcagtgagccgagatggagccactgcactccagcgtggg
Downstream sequence
tgacagagcgagattctgcctcaaaaaaaaagaaaaaGACCCATCTGCTTTTTCTGCAATCTACTTTCCAAAACTAAACTATCATTTAGGGTGTACTTAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate