Basic Information
VIS ID
TVIS30006343
Fusion event
HIV-ESD integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
47364999/46790864 (Hg38)
End
47364999/46790864 (Hg38)
Orient
-
Location type
Intronic
Target gene
ESD
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-324-5p ; hsa-mir-149-5p ; hsa-mir-92a-3p ; hsa-mir-525-3p ; hsa-mir-580-3p ; hsa-mir-526b-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-589-5p ; hsa-mir-5571-5p ; hsa-mir-129-5p ; hsa-mir-6885-3p ; hsa-mir-1178-3p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-3934-3p ; hsa-mir-545-3p ; hsa-mir-4307 ; hsa-mir-33a-3p ; hsa-mir-4703-5p ; hsa-mir-3942-5p
Nearest miRNA
hsa-mir-2276/Upstream/2594664; hsa-mir-1267/Downstream/3205551;
Nearest TSS
ENST00000623511/Upstream/6514; ENST00000452352/Downstream/2574;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/236293, chr13-CpG: 67/Downstream/5764
Upstream sequence
gtgtcatttctcaggttttcttgcttatgtttagaatgtagctttctaggttttactaagtcaggtactacctctccatttgtattcctgcttctaaaat
Downstream sequence
gttattcttagctcctgtctcctgcttctttatgcctttataggtatatgtatgtgtgcgtgtgtgtttaatctctttacttaatgccatgttagtcaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate