VISDB Viral Integration Site DataBase

VIS ID

TVIS30006348

Fusion event

HIV-RB1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr13

Cytoband

q14.2

Reference genome

Start

End

48936326/48362190 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-106a-5p ; hsa-mir-26a-5p ; hsa-mir-23b-3p ; hsa-mir-335-5p ; hsa-mir-106b-5p ; hsa-mir-675-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-192-5p ; hsa-mir-132-3p ; hsa-mir-212-3p ; hsa-mir-130b-3p ; hsa-mir-215-5p ; hsa-mir-93-5p ; hsa-mir-21-5p ; hsa-mir-149-5p ; hsa-mir-100-5p ; hsa-mir-99a-5p ; hsa-mir-221-3p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-892a ; hsa-mir-3152-3p ; hsa-mir-4318 ; hsa-mir-4325 ; hsa-mir-3614-5p ; hsa-mir-4693-5p ; hsa-mir-6513-5p ; hsa-mir-26b-5p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-1258 ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-494-3p ; hsa-mir-1182 ; hsa-mir-1178-5p ; hsa-mir-141-3p ; hsa-mir-590-5p

Nearest miRNA

hsa-mir-2276/Upstream/4165990; hsa-mir-1267/Downstream/1634225;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/42469, chr13-CpG: 96/Downstream/170085

Nearest cancer related gene

RB1(TSG, No orient, 0)

Upstream sequence

gcatgcaccaccacacctggctaatttttgtatttttagtagagacggggtttcaccgtgttggccaggctggtcttgaactcctgacctcatgatccac

Downstream sequence

ctgccttggcctcccaaagtgctaggattacaggcgtgagccaccacacccagccATCTGTAATATTTTTAATAGCTGAACCTGTATTTAGTTTGGATTG