Basic Information
VIS ID
TVIS30006351
Fusion event
HIV-LPAR6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
49007731/48433595 (Hg38)
End
49007731/48433595 (Hg38)
Orient
-
Location type
Intronic
Target gene
LPAR6
Nearest miRNA
hsa-mir-2276/Upstream/4237395; hsa-mir-1267/Downstream/1562820;
Nearest TSS
ENST00000623511/Upstream/6688; ENST00000480491/Downstream/11072;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/113874, chr13-CpG: 96/Downstream/98680
Upstream sequence
GTAAAAAATTTTTGTTCAGAGAATTTCTGCCACTAAATAAGTCTTAAATAAGTATGCCACATAGGATAGACTGTATTTAAATGAAACCATTTTTTATAAC
Downstream sequence
TTACACCAAATATTATGACAAAAGCATAATTGTTTCTTGATAAAACTGTTCCACTGTTTTATTTGTTTTACTGTTAACAAAAATGCATTTTTTTTTTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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