Basic Information
VIS ID
TVIS30006352
Fusion event
HIV-RCBTB2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
49094530/48520394 (Hg38)
End
49094530/48520394 (Hg38)
Orient
+
Location type
Intronic
Target gene
RCBTB2
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-2276/Upstream/4324194; hsa-mir-1267/Downstream/1476021;
Nearest TSS
ENST00000623511/Upstream/27821; ENST00000617562/Downstream/12358;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/200673, chr13-CpG: 96/Downstream/11881
Upstream sequence
TGACCCAATCAACTCCGTGCCCAACTGTCAAGTAAGAAACTGGCTGAGCAAGAGCCAAGTATGGTCAAGAGAAAAATCTGTATGGGGAAAAAAGCACTAC
Downstream sequence
TAAGGAATGAGAGCATGGCAATATGGTGTCCCTAGAATTCAGTCCTGGTTTGGCACAGGTAACCTTCCTTACTGCAAATAACACTACTGCAGGTGATAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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