Basic Information
VIS ID
TVIS30006354
Fusion event
HIV-DLEU2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
50636606/50062470 (Hg38)
End
50636606/50062470 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
DLEU2
miRNAs that regulate target gene
hsa-mir-193b-3p
Nearest miRNA
hsa-mir-15a/Upstream/13269; hsa-mir-1267/Downstream/1286097;
Nearest TSS
ENST00000623511/Upstream/47216; ENST00000413510/Downstream/19502;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/64963, chr13-CpG: 101/Downstream/18675
Nearest cancer related gene
DLEU2(TSG, No orient, 0)
Upstream sequence
gtgcaatggtgcaatctcagctcactgcaacctctgccttccaggtttaagcagttctcctgcctcagcctcctgagtagctgggattacaggtgcacgc
Downstream sequence
caccatgcctggctaatttttgttatttatttatttatttatttatttatttatttatttatttatttatttttgagacagagtttcactctttcgccca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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