Basic Information
VIS ID
TVIS30006360
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
54090390/53516255 (Hg38)
End
54090390/53516255 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-15a/Upstream/706115; hsa-mir-1267/Downstream/795717;
Nearest TSS
ENST00000623511/Upstream/171044; ENST00000569422/Downstream/299164;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/314045, chr13-CpG: 25/Downstream/3624582
Nearby gene
LINC00558(No orient, 299164)
Upstream sequence
tttctatggatgggcattgagtttattctaatattttggtataataaaagttccatcaagaataaacttgtgcatatattgttttagtttattgacgtgt
Downstream sequence
atccttaggataaatttctagtagtaagactgctgagtcaaataataaatgtatACCTTACCGTTTGCTTTTGTTTTTTACTTTTACTTTGTAATTAACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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