Basic Information
VIS ID
TVIS30006362
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
54296795/53722660 (Hg38)
End
54296795/53722660 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-15a/Upstream/912520; hsa-mir-1267/Downstream/589312;
Nearest TSS
ENST00000623511/Upstream/377449; ENST00000569422/Downstream/92759;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/520450, chr13-CpG: 25/Downstream/3418177
Nearby gene
LINC00558(No orient, 92759)
Upstream sequence
gacaggtcattggaagttatccaatatgagaagcaaaaagaaaaaaaaaggtgaaaaaaagggaagacaacataaaagagttctgggacactatcaagaa
Downstream sequence
taataatacatgcattaatggtgaatgacagggaaaagagagagaagatacagaaaatagttccaaaaaataatggcaaaaaactccccaaatctggaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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