Basic Information
VIS ID
TVIS30006364
Fusion event
HIV-DIAPH3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
60666524/60092390 (Hg38)
End
60666524/60092390 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13B ; FRA13C
Target gene
DIAPH3
miRNAs that regulate target gene
hsa-mir-155-5p
Nearest miRNA
hsa-mir-1297/Upstream/4917842; hsa-mir-1267/Downstream/1107408;
Nearest TSS
ENST00000623511/Upstream/79084; ENST00000428656/Downstream/52308;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2457594, chr13-CpG: 52/Downstream/71136
Upstream sequence
ATCATTAAAGGACAAAGGCAATTAGTATCAGTATCATAGTAGCAGGATACAGAGCCCATCTATATAGAGAGCTAAAAAAAggccgggcgcagtggctcac
Downstream sequence
gcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctaataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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