Basic Information
VIS ID
TVIS30006368
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
62952457/62378324 (Hg38)
End
62952457/62378324 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/1178444; hsa-mir-1267/Downstream/3588006;
Nearest TSS
ENST00000623511/Upstream/54667; ENST00000618134/Downstream/353856;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1980413, chr13-CpG: 36/Downstream/1433262
Nearby gene
LINC01075(No orient, 128373)
Upstream sequence
AAATATCAATGAATAGAATTGCGGAGCTGAATTGTGTCAAAGTAACAGGTAGCTATACATTTGCTAAAAGTAATACATTTGGGGAAAACATAATACTGTT
Downstream sequence
TTTTAAACGGTCATAAGATTTATCTCACCATTACTGCAACAAGCACCCATGACAAAAATTGTCTTACTCTCCAGACAGAAGAGAAAGACCAATTCCAGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate