Basic Information
VIS ID
TVIS30006375
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
74198455/73624318 (Hg38)
End
74198455/73624318 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
LINC00393 ; LOC105370256
Nearest miRNA
hsa-mir-1297/Upstream/7405994; hsa-mir-1267/Downstream/4073694;
Nearest TSS
ENST00000623511/Upstream/60074; ENST00000419499/Downstream/23935;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/564086, chr13-CpG: 31/Downstream/509654
Nearby gene
LINC00392(No orient, 36439)
Upstream sequence
CCATCTTATAAAATATTTGAAAACACTCTGTAGAGTGTGAACTGATTCAGAAAGAGGCATATTGTTCTACTTTCTTTATCAACAAGGTAAAAATGTTTTG
Downstream sequence
CTATTTACCCAATTTTCCAGCTTTTGATAGCTTTTTCTATCTTCCTATCTATCGAATTTCCCCAGAATCTCTGATAAGGCATAAGAGTATATAAAAGAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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