Basic Information
VIS ID
TVIS30006385
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
82486048/81911913 (Hg38)
End
82486048/81911913 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/4213797; hsa-mir-1267/Downstream/5706752;
Nearest TSS
ENST00000623511/Upstream/661475; ENST00000446314/Downstream/1970480;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1256603, chr13-CpG: 18/Downstream/1967616
Nearby gene
LINC00564(No orient, 684930)
Upstream sequence
ACAGCACTTTAGAAAGCTGTGCTCTTATCAGAGATAAGAAAGCTGAATGTTTATAGATTTTATGACAGGTTTTAAATATACTGAACCTATATTACACTCC
Downstream sequence
AACGATGAAAAACTCAGTGAAAACCATTCACATATGCAtaaggcagaaatgatcatgtcacatttttgcttaaaactttccaatgttggccgggcgcggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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