Basic Information
VIS ID
TVIS30006387
Fusion event
HIV-LINC00333 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
84728032/84153897 (Hg38)
End
84728032/84153897 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00333
Nearest miRNA
hsa-mir-1297/Upstream/6455781; hsa-mir-1267/Downstream/3464768;
Nearest TSS
ENST00000623511/Upstream/271504; ENST00000446314/Downstream/408467;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/274135, chr13-CpG: 121/Downstream/3517417
Upstream sequence
agaagtttcattgtgtttgcactctacttttcttggatttcattgagcttccttgctttgaactatttatccatcatttctgggtttccattttggttag
Downstream sequence
gcaccatagctggagagctagtgtgatatcttgatgtatcattacattgtgattttttttttttttatcattccagaatgcttttactggttctttgtca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate