Basic Information
VIS ID
TVIS30006390
Fusion event
HIV-LOC107984621 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
90110681/89458427 (Hg38)
End
90110681/89458427 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984621
Nearest miRNA
hsa-mir-1297/Upstream/1839687; hsa-mir-1267/Downstream/772755;
Nearest TSS
ENST00000623511/Upstream/185224; ENST00000434117/Downstream/42082;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/94906, chr13-CpG: 49/Downstream/1716568
Nearby gene
LINC01040(No orient, 19180)
Upstream sequence
ctcaacatctgtataaatggaaccactgctgtggaccacggtggaaataagaattccacaacaccagagcccaaagtttcagggataggaaacaaaaatt
Downstream sequence
tttcaaaagcttactaagggtaatagggagaagaggaactccaattttgaccccttgacttccagacccatgaattgtggctctgagaagatgacaatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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