Basic Information
VIS ID
TVIS30006393
Fusion event
HIV-TGDS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
95234040/94581786 (Hg38)
End
95234040/94581786 (Hg38)
Orient
+
Location type
Intronic
Target gene
TGDS
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1297/Upstream/2091566; hsa-mir-1267/Downstream/1845443;
Nearest TSS
ENST00000623511/Upstream/597; ENST00000376958/Downstream/14456;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/31747, chr13-CpG: 39/Downstream/14248
Upstream sequence
aaaattgagaagtggtcAAGGTTTACTTTTTCTCACTGTAAGTCTTTTCAGACTATTTGATTTTCACTATGTATGTGTCTTGGTAAAATAAGTAAATTCA
Downstream sequence
TAAATAATAAAATAAACAGAATGAGATCACTGCAGACACCAATTATAAAAATTATAGATTAGACAATGGAGTCTTCTTTGCCTAAAAAGTGTAATATTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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