Basic Information
VIS ID
TVIS30006399
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98417421/97765167 (Hg38)
End
98417421/97765167 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13D
Nearest miRNA
hsa-mir-1297/Upstream/1337875; hsa-mir-1267/Downstream/443357;
Nearest TSS
ENST00000623511/Upstream/87204; ENST00000604129/Downstream/174189;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/330302, chr13-CpG: 133/Downstream/210638
Nearby gene
IPO5(No orient, 188508)
Upstream sequence
tttgctattgtgaataatgctgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatgg
Downstream sequence
ctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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