Basic Information
VIS ID
TVIS30006406
Fusion event
HIV-FAM155A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
108315598/107663250 (Hg38)
End
108315598/107663250 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM155A
Nearest miRNA
hsa-mir-1267/Upstream/132002; hsa-mir-4502/Downstream/2677708;
Nearest TSS
ENST00000623511/Upstream/759151; ENST00000622038/Downstream/203485;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/744927, chr13-CpG: 148/Downstream/203694
Upstream sequence
ACAAGACTTTGCAAATGAAATGTACTAAGATATTTCATTCTTGAAGAATGTTCAACTGTGTTTGAAGGTGGAGATAAATTCCAGTGACTCTTTTCATAAC
Downstream sequence
AGCACATAAAATTCATTCATCAGTTCCTTAGGGGACAAATGTTTCCTTTTTGTGTCCAAGGGTAATAGACCTGAATAGAAAACTAATGAAATAGAAATTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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