VISDB Viral Integration Site DataBase

VIS ID

TVIS30006411

Fusion event

HIV-TFDP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr13

Cytoband

q34

Reference genome

Start

End

114275126/113620811 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-935 ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-374a-5p ; hsa-mir-410-3p ; hsa-mir-374b-5p ; hsa-mir-4495 ; hsa-mir-2113 ; hsa-mir-5010-3p ; hsa-mir-3646 ; hsa-let-7c-3p ; hsa-mir-185-5p ; hsa-mir-3177-5p ; hsa-mir-4306 ; hsa-mir-4311 ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4644 ; hsa-mir-6731-5p ; hsa-mir-6754-5p ; hsa-mir-6760-5p ; hsa-mir-8085 ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-143-5p ; hsa-mir-569 ; hsa-mir-629-5p ; hsa-mir-3611 ; hsa-mir-4506 ; hsa-mir-6839-3p ; hsa-mir-1252-3p ; hsa-mir-3134 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-5003-5p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-369-3p ; hsa-mir-758-3p ; hsa-mir-1257

Nearest miRNA

hsa-mir-1267/Upstream/357812; hsa-mir-4502/Downstream/623694;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/14561, chr13-CpG: 35/Downstream/4787

Upstream sequence

TATTCTGAAAATACCTTTCACATATATAAAACAATAAAAAAGTAAATATTTGCTTTTCTTAGGATGCACACCTTTATTTTTGGAAGAAAATTTCCCAAAG

Downstream sequence

CAGATCATCTTATTTTAGTTCCAGAAGAGAATTTTAAATATGTGCTGACATTGGTTGGTAAAAATACTAATATTTAACCCAGTTGAATCAAAAGGCAAAT