VISDB Viral Integration Site DataBase

VIS ID

TVIS30006414

Fusion event

HIV-PARP2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q11.2

Reference genome

Start

End

20812307/20344148 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6815-5p ; hsa-mir-6865-5p ; hsa-mir-577 ; hsa-mir-5692a ; hsa-mir-548m ; hsa-mir-6888-3p ; hsa-mir-6510-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4522 ; hsa-mir-3120-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-589-3p ; hsa-mir-3664-5p ; hsa-mir-4432 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-2467-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-1827 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-609 ; hsa-mir-4455 ; hsa-mir-6772-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-5589-5p ; hsa-mir-6847-3p ; hsa-mir-6776-5p ; hsa-mir-3677-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-4330 ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4716-5p ; hsa-mir-1245b-3p ; hsa-mir-4781-3p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-7160-5p ; hsa-mir-4268 ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-4267 ; hsa-mir-4768-3p ; hsa-mir-6736-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6769a-3p ; hsa-mir-3943 ; hsa-mir-4323 ; hsa-mir-34b-3p ; hsa-mir-6513-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-513b-5p ; hsa-mir-6778-5p ; hsa-mir-6894-5p ; hsa-mir-1233-5p ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-7162-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-624-3p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-6807-5p ; hsa-mir-33a-3p ; hsa-mir-4307

Nearest miRNA

hsa-mir-1185-1/Downstream/679166;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/655896, chr14-CpG: 22/Downstream/69262

Upstream sequence

cagttccagagagtaaaatgcgagtcttagacctattgagatacggTATTATGTGTATAATGTTCTTAAATGCATAGGTGCACCCTATAAATTAGGTTCT

Downstream sequence

ATTGTACTTCTCTAGAAGTACAGTATTGTACAATATTCTAATATtggagtaagtgaagtaggaagagatcaaatacttctccaagtttccacagagaaaa