Basic Information
VIS ID
TVIS30006415
Fusion event
HIV-TEP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
20867865/20399706 (Hg38)
End
20867865/20399706 (Hg38)
Orient
-
Location type
Intronic
Target gene
TEP1
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-16-5p ; hsa-mir-1231 ; hsa-mir-4288 ; hsa-mir-632 ; hsa-mir-6805-3p ; hsa-mir-6888-3p ; hsa-mir-5691 ; hsa-mir-4713-5p ; hsa-mir-3194-3p ; hsa-mir-1301-5p ; hsa-mir-6502-5p ; hsa-mir-3120-5p ; hsa-mir-4766-5p ; hsa-mir-2116-3p ; hsa-mir-146a-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6812-3p ; hsa-mir-4430 ; hsa-mir-3652
Nearest miRNA
hsa-mir-1185-1/Downstream/623608;
Nearest TSS
ENST00000550708/Upstream/7961; ENST00000555435/Downstream/4151;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/711454, chr14-CpG: 22/Downstream/13704
Upstream sequence
ggcaacaaagtgaggccctgtttcttaaaaaaaaaaaaaaaaaaaaaaaaaGTACATATACATATATTCTGGTGTATCCTAAAAATTGTTTTTGTAGTAT
Downstream sequence
ATGATTAAAAAAAAGAAACACTAGCCACCACGGGATTAGACTATGGGCATTTGCCTCAACCAGGATAAATGACATTAAAAGAATAAATTTACATGTCCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate