Basic Information
VIS ID
TVIS30006416
Fusion event
HIV-OSGEP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
20915709/20447550 (Hg38)
End
20915709/20447550 (Hg38)
Orient
-
Location type
Intronic
Target gene
OSGEP
Nearest miRNA
hsa-mir-1185-1/Downstream/575764;
Nearest TSS
ENST00000550708/Upstream/11392; ENST00000555435/Downstream/138;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/11989, chr14-CpG: 87/Downstream/7031
Upstream sequence
GGTCCTGTGTCCAGCCCGAAACATCTCCCAGCCAGCCTGGGCTATCATCGCTCCATTGTCAATACAGAATCTGGGATGCAAGAGAGATGAAAATTGGGAT
Downstream sequence
CTAAGGGTGGAAAATCACTATAACAGGAGAAGTAAAAAAGAAACCAAAGGGAAAGTGTCTTTACCTCTCATCTGTAGCAAAAAGCCGGGCTCCACGTTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate